PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK19764.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MIKC_MADS
Protein Properties Length: 180aa    MW: 20989 Da    PI: 10.7178
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK19764.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.38.7e-28959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krien + rqvtfskRrng+lKKA+ELS LCdaev +i+fs++gkly y+s
  PK19764.1  9 KRIENPTSRQVTFSKRRNGLLKKAFELSLLCDAEVGLIVFSPSGKLYQYAS 59
               79***********************************************86 PP
2K-box71.32.9e-2481172899
      K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                +++++  e +++ ++ +k+ +e+L+ ++R+l GedL++L +keL+qLe+qL+ +++++R kK +++ e+i+ l+++ ++l een++L+kk++
  PK19764.1  81 DQHSRAIEFWRTRIEEMKRSTETLEGNLRNLAGEDLSNLGMKELRQLERQLKIGVERVRCKKRRIVSEHINFLKRRRRALVEENTRLQKKVK 172
                46788899*********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.0E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.581161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-31274IPR002100Transcription factor, MADS-box
CDDcd002657.64E-39270No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-30323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-303859IPR002100Transcription factor, MADS-box
PfamPF014865.5E-2183171IPR002487Transcription factor, K-box
PROSITE profilePS5129712.65687180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
XGRGKVELKR IENPTSRQVT FSKRRNGLLK KAFELSLLCD AEVGLIVFSP SGKLYQYASH  60
DMESSIVRYK SEMGLLGSAD DQHSRAIEFW RTRIEEMKRS TETLEGNLRN LAGEDLSNLG  120
MKELRQLERQ LKIGVERVRC KKRRIVSEHI NFLKRRRRAL VEENTRLQKK VKLLDQQQEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A8e-23271170Myocyte-specific enhancer factor 2A
3mu6_B8e-23271170Myocyte-specific enhancer factor 2A
3mu6_C8e-23271170Myocyte-specific enhancer factor 2A
3mu6_D8e-23271170Myocyte-specific enhancer factor 2A
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141157KRRIVSEHINFLKRRRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM1900739e-33KM190073.1 Carya cathayensis MADS-like protein (TM) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024017888.11e-100agamous-like MADS-box protein AGL1
TrEMBLA0A2P5FDA01e-107A0A2P5FDA0_TREOI; MADS-box transcription factor
STRINGVIT_17s0000g01230.t018e-84(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.12e-46AGAMOUS-like 16