PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK19826.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ARR-B
Protein Properties Length: 617aa    MW: 68651.7 Da    PI: 5.7879
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK19826.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.14.1e-28362416156
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                k +++WtpeLH++Fv+aveqL G ++A+P++ilelmkv+gLt+++v+SHLQkYR++
  PK19826.1 362 KMKVDWTPELHKKFVHAVEQL-GVDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 416
                5689*****************.********************************96 PP
2Response_reg29.73.2e-11201261109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+ d + + + ++r+ le  +y +v  + + +ea+  +      ++l ++ ++ ++ +  e++k +++++ +lpii+ ++    +++ +++ +Ga 
     PK19826.1  20 VLVLDQDTTSATNIRSNLEAMDY-VVSIFCNESEAMSAFSSTPesFHLAIVEVNTSNEN--ETFKFLETAK-ELPIIMTSTVHCLSTMMKCIALGAV 112
                   7999*******************.***************666666********999965..6677776666.899*****9999************* PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   +fl Kp ++++l++
     PK19826.1 113 EFLPKPLSEDKLRN 126
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.57E-1516133IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.5E-1616163No hitNo description
SMARTSM004480.004218128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011022.14619132IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.8E-820127IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.92E-921131No hitNo description
PROSITE profilePS5129415.347359418IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-27360418IPR009057Homeodomain-like
SuperFamilySSF466892.24E-18361419IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-24362417IPR006447Myb domain, plants
PfamPF002492.3E-8365414IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MVCTANDLEE WKDFPKGLRV LVLDQDTTSA TNIRSNLEAM DYVVSIFCNE SEAMSAFSST  60
PESFHLAIVE VNTSNENETF KFLETAKELP IIMTSTVHCL STMMKCIALG AVEFLPKPLS  120
EDKLRNIWQH VVHKAFNAGG GTPPEPLKPV KESIASMLQL KLEKEEPNTT ISIEVENLSG  180
NKENNHEQSA GSDKYPAPST PQLKQGARLL DDGDCQDQTN CSTEKENGEQ DGESKSVETT  240
YGDSVAEEDT LLIGEPEMQA KSIVKEEEDS VDGSKNESES HMSPHLHNDD SPNNAISPHL  300
HNDDCPNNVI SPHLHNDDNS NNVMFPQLHN DDSPNTVIGG ANQPSKASAL TNSSMSKSNR  360
KKMKVDWTPE LHKKFVHAVE QLGVDQAIPS RILELMKVEG LTRHNVASHL QKYRMHKRHI  420
LPKEEDRRWP RPRDPVQKNY YPHQPIMAYP SYHSNHAVPV APVYSMWGQP GNHPASVHMW  480
GSPAYHTPWQ SAESWQWKSF PGMHADAWGC PVMPPHPHSP YASYAPQVNV SGFHNTGAVN  540
NVCSMPQNTF DVQPAEEVID KVVKEAISKP WLPLPLGLKP PSTDSVLYEL SRQGISNIPP  600
HLGNSDSLCH GRTLHHD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-16367416655Transcription factor LUX
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024026471.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_024026472.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_024026473.10.0two-component response regulator-like APRR2 isoform X1
TrEMBLA0A2P5BSP50.0A0A2P5BSP5_TREOI; Two-component response regulator
STRINGXP_010104373.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35663465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.55e-80ARR-B family protein