PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK20262.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NAC
Protein Properties Length: 95aa    MW: 10988.9 Da    PI: 9.467
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK20262.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM661.1e-201694176
        NAM  1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr 76
               lppGfrF+Ptdeelv +yL+ kv + +     +++++e+ ++ +++PwdLp++    e++ yfFs++  ky++gkr+nr
  PK20262.2 16 LPPGFRFQPTDEELVFQYLRCKVFSFPlpPYSSDIVPEIiNLSTYDPWDLPSASGDLEQDRYFFSNKGGKYKNGKRSNR 94
               79***********************996533346788888***********6666667789*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-211294IPR003441NAC domain
PROSITE profilePS5100525.7721695IPR003441NAC domain
PfamPF023659.1E-101787IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
XALRSFVRNN NGVIKLPPGF RFQPTDEELV FQYLRCKVFS FPLPPYSSDI VPEIINLSTY  60
DPWDLPSASG DLEQDRYFFS NKGGKYKNGK RSNRX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-1414941591NO APICAL MERISTEM PROTEIN
1ut4_B5e-1414941591NO APICAL MERISTEM PROTEIN
1ut7_A5e-1414941591NO APICAL MERISTEM PROTEIN
1ut7_B5e-1414941591NO APICAL MERISTEM PROTEIN
3swm_A5e-1414941894NAC domain-containing protein 19
3swm_B5e-1414941894NAC domain-containing protein 19
3swm_C5e-1414941894NAC domain-containing protein 19
3swm_D5e-1414941894NAC domain-containing protein 19
3swp_A5e-1414941894NAC domain-containing protein 19
3swp_B5e-1414941894NAC domain-containing protein 19
3swp_C5e-1414941894NAC domain-containing protein 19
3swp_D5e-1414941894NAC domain-containing protein 19
4dul_A5e-1414941591NAC domain-containing protein 19
4dul_B5e-1414941591NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007211149.22e-36NAC domain-containing protein 83
SwissprotQ9FY931e-25NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A2P5DV911e-40A0A2P5DV91_PARAD; NAC domain containing protein
STRINGEMJ123481e-35(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.16e-28NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]