PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK20376.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C3H
Protein Properties Length: 314aa    MW: 33244.7 Da    PI: 8.4373
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK20376.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.42.4e-0893118227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                kt+ C++f     Ck+Gd+C+FaHg+
  PK20376.1  93 KTRVCNRFNSAEGCKFGDKCHFAHGE 118
                89**********************96 PP
2zf-CCCH37.63.6e-12281305126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                ykt+lC++f + GtC +GdrC+FaHg
  PK20376.1 281 YKTKLCDNFTK-GTCTFGDRCHFAHG 305
                9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.05E-791122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-1291121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.63891119IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-491118IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-693118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-16277311IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-9280310IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-8280306IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.84280307IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9281305IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
XEGSFNCNGG FKKSKQEMDS FSSGVGSKSK PCTKFSAPLV VHSVKVAIFF IXVPGGYNAV  60
AQMMNLAPLV PPPSRNMGNQ APTLNGSSAS SVKTRVCNRF NSAEGCKFGD KCHFAHGEWE  120
IGKVVAPSHD DPRPMPPMPN RYSGRMEPPQ PPPGHAFSFG ASATAKISVD ASLAGAXHLK  180
GWCKLEADMS LDEAKLAIRE HESDPNLKNI ELEGTFEQIK EASVMVRELI VNVSMSAPGK  240
PSGGPDHGHG HGHGGHGHGH GPGGQSHGPG CQNHGPSGNN YKTKLCDNFT KGTCTFGDRC  300
HFAHGATELR KTGL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015898930.11e-120zinc finger CCCH domain-containing protein 14 isoform X1
SwissprotQ7F8R02e-81C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2P5BTU01e-139A0A2P5BTU0_PARAD; Polyribonucleotide nucleotidyltransferase
TrEMBLA0A2P5E6331e-139A0A2P5E633_TREOI; Polyribonucleotide nucleotidyltransferase
STRINGcassava4.1_013023m1e-116(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.15e-44C3H family protein