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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | PK20397.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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| Family | bHLH | ||||||||
| Protein Properties | Length: 111aa MW: 12654.2 Da PI: 4.2608 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 14.9 | 5e-05 | 3 | 34 | 22 | 55 |
HHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 22 eLrellPk.askapskKlsKaeiLekAveYIksLq 55
+L+ellPk a + s +++ +++YIk+Lq
PK20397.1 3 KLQELLPKsA---EGVGGSQVSVFDDVIDYIKYLQ 34
8*******55...8888*****************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:4.10.280.10 | 5.3E-5 | 2 | 43 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 5.23E-5 | 3 | 44 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 111 aa Download sequence Send to blast |
XNKLQELLPK SAEGVGGSQV SVFDDVIDYI KYLQLQIKDL SESRLGGESP TKPIIFREGY 60 GHYFYDQETL NEPLEEIIMA KWLEVNSLAV TNMLERKGLL LMPIEFTEAL Q |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015891593.1 | 8e-38 | uncharacterized protein LOC107426023 isoform X2 | ||||
| Refseq | XP_024933181.1 | 9e-38 | uncharacterized protein LOC107426023 isoform X1 | ||||
| TrEMBL | A0A2P5CS75 | 2e-40 | A0A2P5CS75_TREOI; Myc-type, basic helix-loop-helix (BHLH) domain containing protein | ||||
| STRING | XP_010090380.1 | 3e-34 | (Morus notabilis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF12164 | 24 | 26 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G30980.1 | 2e-14 | LJRHL1-like 2 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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