PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK20442.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GeBP
Protein Properties Length: 292aa    MW: 32454.5 Da    PI: 4.4777
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK20442.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF5731185.2e-37144242196
     DUF573   1 klfqrlwseeDeivlLqGlidfkaktgk...spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 
                klfqrlw++eDei lLqG++d+++++gk   + ++d+  fy+++k++++++++k+qlveK+rrLKkK+++  +k++sgke+sf+++hdq +fe+s+kiW
  PK20442.1 144 KLFQRLWTDEDEIGLLQGFLDYTTQRGKtthHGQNDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVLNKISSGKEFSFKSPHDQATFEISRKIW 242
                579*************************5433345**************************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045048.7E-35146242IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MASHQDDVVL PGEEDLDSSS QDEEEDDVVD EDEDDDDEEN DDVLPEASSP PSTSDRFHVA  60
VAVPPSSSNS VTVALPAVTT NGEPLHLHHR HPPPPPPPSS LVTTVIAGAS ASDPSAVSDR  120
HGNDIVLAVQ PEEKKPAAFD DSRKLFQRLW TDEDEIGLLQ GFLDYTTQRG KTTHHGQNDT  180
ALFYDQIKSK LQLDFNKNQL VEKLRRLKKK YRNVLNKISS GKEFSFKSPH DQATFEISRK  240
IWCDLGRIGP EDNALEDEDP NPNNPNFHIE VKAEDAGGFI LEKKTPPPRS RK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875499.12e-99probable transcription factor At3g04930
RefseqXP_024926809.12e-99probable transcription factor At3g04930
RefseqXP_024926811.12e-99probable transcription factor At3g04930
SwissprotQ9CAV72e-52STKLJ_ARATH; Probable transcription factor At3g04930
TrEMBLA0A2P5DKS41e-124A0A2P5DKS4_PARAD; DNA-binding storekeeper protein-related transcriptional regulator
STRINGXP_010090273.11e-97(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32553365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.23e-53DNA-binding storekeeper protein-related transcriptional regulator