PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK20504.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C3H
Protein Properties Length: 368aa    MW: 41697.6 Da    PI: 6.697
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK20504.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.5e-07193214527
                --SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                 C++f + G+Ck+G++Ck+ Hg+
  PK20504.2 193 TCHYFNK-GFCKHGSNCKYYHGQ 214
                6******.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.596188215IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-5191213IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-4192215IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-5193214IPR000571Zinc finger, CCCH-type
PROSITE profilePS5164412.461240323IPR025605OST-HTH/LOTUS domain
PfamPF128728.3E-16240319IPR025605OST-HTH/LOTUS domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MDFSDSTRVV FSRIRELEPE HVTKIIGYLL LQDNGDREMI RLAFGPDNLI QSLVNKAKTE  60
LGLSKPSPSS PSQANQQPVL DHSLHFSSYT PASARVAFTP PTLITQSPYW DHQLSAEHKL  120
FRNAELQPLY PDSVAAEDFH LQNQLQFLRL DDPLESASSV SADQVSSYYY TEPTLGLRQS  180
RRSPSLPELP VKTCHYFNKG FCKHGSNCKY YHGQHSPDSF LHHHVFSDYT NDDHAISPGS  240
LEKLEMEITE LLRSRRGCPV SIASLPMMYY EKYGRSLQAE GYLTESQRHG KTGYSLTKLL  300
ARLKNSIRLL DRPHGQHSVI LAEDAPRYLE HGGDKNESGG IVSGSRQIYL TFPAESTFTE  360
QDVSNYFW
Functional Description ? help Back to Top
Source Description
UniProtPossesses ribonuclease activity in vitro. {ECO:0000269|PubMed:18582464}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015898755.10.0zinc finger CCCH domain-containing protein 18
SwissprotQ9SJ411e-122C3H18_ARATH; Zinc finger CCCH domain-containing protein 18
TrEMBLA0A2P5ESG70.0A0A2P5ESG7_TREOI; Splicing factor-like protein
STRINGXP_010112769.11e-172(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF288177
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]