PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK20543.2

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Trihelix

Protein Properties

Length: 362aa MW: 40328.7 Da PI: 6.3344

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK20543.2	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	83.5	2.8e-26	97	179	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rre++ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk +++ k + +s +++y+++le PK20543.2 97 WVQEETRSLIGFRREVDGLFNTSKSNKHLWEQISSKMREKGFDRSPTMCTDKWRNLLKEFKKARHQVKVG--SRSAKMSYYEDLE 179 ******************************************************************98..45568****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-4	87	157	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.386	89	153	IPR017877	Myb-like domain
SMART	SM00717	0.0054	93	155	IPR001005	SANT/Myb domain
CDD	cd12203	1.06E-27	95	160	No hit	No description
Pfam	PF13837	2.1E-19	96	181	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
XNMYLSSEKT RSVDFYKEGV GGGGGGGGGG GEEEESDRDM MMEVVVTNGV LGSHPRNQTQ 60 NQNQNQNQLQ QQMILGENSS GGEEHEVKAP KKRAETWVQE ETRSLIGFRR EVDGLFNTSK 120 SNKHLWEQIS SKMREKGFDR SPTMCTDKWR NLLKEFKKAR HQVKVGSRSA KMSYYEDLEE 180 LLRDRNKNSS STTTVSTSAY KSHTPPPKVD SFIHFSDKGL EDANIPFGPI GATDRSAVNL 240 ERRLDHDGDP LAITAADAVV ASGVPPWNWR EAPGNGAENP PPFCGRIITV KLGEYSKRIG 300 IDGSAEAIKE AIKSAFRIRT KRAFWLEDED EVVRSLDRDM PLGNYTLHLD EGFISLPSIF 360 LG

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

XNMYLSSEKT RSVDFYKEGV GGGGGGGGGG GEEEESDRDM MMEVVVTNGV LGSHPRNQTQ  60
NQNQNQNQLQ QQMILGENSS GGEEHEVKAP KKRAETWVQE ETRSLIGFRR EVDGLFNTSK  120
SNKHLWEQIS SKMREKGFDR SPTMCTDKWR NLLKEFKKAR HQVKVGSRSA KMSYYEDLEE  180
LLRDRNKNSS STTTVSTSAY KSHTPPPKVD SFIHFSDKGL EDANIPFGPI GATDRSAVNL  240
ERRLDHDGDP LAITAADAVV ASGVPPWNWR EAPGNGAENP PPFCGRIITV KLGEYSKRIG  300
IDGSAEAIKE AIKSAFRIRT KRAFWLEDED EVVRSLDRDM PLGNYTLHLD EGFISLPSIF  360
LG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	4e-45	91	177	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010111631.1	1e-176	trihelix transcription factor GT-4
Swissprot	Q9FX53	1e-140	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A2P5FBY0	0.0	A0A2P5FBY0_TREOI; C2H2-zinc finger protein family
STRING	XP_010111631.1	1e-175	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6817	32	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-137	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]