PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK20555.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Dof

Protein Properties

Length: 347aa MW: 37915.6 Da PI: 8.9872

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK20555.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.9	2.2e-38	84	144	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lr +PvGgg+rknk+ss PK20555.1 84 HQQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRSIPVGGGSRKNKRSS 144 6899******************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-24	81	136	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.1E-33	86	142	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.817	88	142	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	90	126	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MDTAHWPQEI VVKPIEEIIT NSCPKPHTNN IQASSSLSQG GKINNNNNNI INNNNNNTNL 60 VDMRSSSISK TSMMKPSSQN KDHHQQALNC PRCNSTNTKF CYYNNYSLTQ PRYFCKTCRR 120 YWTEGGSLRS IPVGGGSRKN KRSSPSSSSS SSKIIINSRL PDLVHNQLGQ AHQAHQAQAQ 180 TQAHDLNLGF YPPIINDQKI NHIISNPSSN TSPTSTTTTT TTTTNTSDHF SALELLTGLT 240 SRGFNSFFPI PDFKPSLNFS LDGLGPNTTS ATTTTSNTAS AYGSLPSVHE NNNSGSGRLL 300 FPFEDLKQVS SHNNNNNNSG IIDQNNNIIK ENGDSTGYWT GMLGGGW

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MDTAHWPQEI VVKPIEEIIT NSCPKPHTNN IQASSSLSQG GKINNNNNNI INNNNNNTNL  60
VDMRSSSISK TSMMKPSSQN KDHHQQALNC PRCNSTNTKF CYYNNYSLTQ PRYFCKTCRR  120
YWTEGGSLRS IPVGGGSRKN KRSSPSSSSS SSKIIINSRL PDLVHNQLGQ AHQAHQAQAQ  180
TQAHDLNLGF YPPIINDQKI NHIISNPSSN TSPTSTTTTT TTTTNTSDHF SALELLTGLT  240
SRGFNSFFPI PDFKPSLNFS LDGLGPNTTS ATTTTSNTAS AYGSLPSVHE NNNSGSGRLL  300
FPFEDLKQVS SHNNNNNNSG IIDQNNNIIK ENGDSTGYWT GMLGGGW

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM488131	3e-43	AM488131.2 Vitis vinifera contig VV78X232223.4, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010106133.1	7e-91	dof zinc finger protein DOF4.6
TrEMBL	A0A2P5F524	5e-93	A0A2P5F524_TREOI; Zinc finger transcription factor
STRING	XP_010106133.1	3e-90	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	1e-39	Dof family protein