PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK20698.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family WRKY
Protein Properties Length: 119aa    MW: 13434 Da    PI: 9.9547
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK20698.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.53.2e-2965118355
                -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYege 55 
                D y+WrKYGqK++kgs++prsYY+C+s  gCp++k+ver+ edp+++++tYeg+
  PK20698.1  65 DDYSWRKYGQKPIKGSPYPRSYYKCSSLkGCPARKHVERCLEDPTMLVVTYEGD 118
                99************************998***********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.9E-151761IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.808.4E-3151118IPR003657WRKY domain
PROSITE profilePS5081127.3758119IPR003657WRKY domain
SuperFamilySSF1182908.63E-2561117IPR003657WRKY domain
SMARTSM007742.2E-3063119IPR003657WRKY domain
PfamPF031063.5E-2465117IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
XASEVSTSSI LSSKWMCGEK SEDTTSMKCV ASTGGCHCSK RRKLKKRRRI RVPSVSNKLA  60
DIPPDDYSWR KYGQKPIKGS PYPRSYYKCS SLKGCPARKH VERCLEDPTM LVVTYEGDX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-2151117267WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14250KLKKRRRIR
24549KRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002268403.39e-59PREDICTED: probable WRKY transcription factor 21
SwissprotO043362e-50WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A438ESI62e-57A0A438ESI6_VITVI; Putative WRKY transcription factor 21
STRINGEOY244046e-56(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144241318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.14e-47WRKY DNA-binding protein 21