PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK20740.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C3H
Protein Properties Length: 964aa    MW: 105970 Da    PI: 6.063
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK20740.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-06594614525
                --SGGGGTS--TTTTT-SS-S CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                +C++fa  G+C++Gd+C F+H
  PK20740.1 594 PCSNFASAGYCSRGDNCMFSH 614
                7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.083534561IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.004535562IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5536560IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.394564591IPR000571Zinc finger, CCCH-type
SMARTSM003560.012564590IPR000571Zinc finger, CCCH-type
SMARTSM003560.034592616IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6593624IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4594615IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.756594617IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-4594614IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 964 aa     Download sequence    Send to blast
MAVEEPQIET LKTSEALLHF PPHPRRHLQS QTYLTLVRIF SHCYDDSQPS PSTHNLHKDL  60
RNEKDGNELG QRTETQASQF VELVGSDNTQ PQGLKSDKNT EVNLNVDDKC SLDSRHSQQL  120
SIDEIDKLMR IDENEDLPNQ KDASDFQEPE FGPELVLIDE LESIVKGSED TVLDNNSKPP  180
VVSLVQNQSG IDEVVVFNNQ KEHVDSKQID SEMSVNVSQK ALSLNNVVIG ESVVRRENSE  240
DIPSLLNTTV LDAGTVRQQN DRELNYAAAM DLNNSSVSII EAGKTERTEF HGENFSEASS  300
FNKTTLANTS GVNNGNDDKT TGEPDALKEV QEMSLKDMKL DESVSCGIMG DVDMEEGEIS  360
GGFSVDDISM DMLLQDAVLL EGDKVNEESI PDKEELSCKV ATERDSESTF FLLDNNNGMG  420
FKESDKTKAV SKPDVSVNEI LQRASKVDAN DALLETTIIE KNNIVGSNKL VLHGIIEEDA  480
TDHDKPATED SGKKKRRLPT KERRAKKKLQ KQKKRAENNR KLGVKRLKLP PILKPKTVSY  540
CRHFMVGRCY EGDKCKFSHD TVPLTKSKPC CHFARNSCMK GDDCPFDHQL SKYPCSNFAS  600
AGYCSRGDNC MFSHKIVPKE DATTSSNAME PEKKVATLMN NSKFKEQLKE KSACQQPFSV  660
SSFSTGISSH KNTGKNKNET FLKQEKSVPK GINFLSVGSL PLVDSVKLKQ QILSPNRIAG  720
AGVGNHLEQH GSGIVQNSNE ILNKSAPIVA PKGVNFLSFG RSQQDDFSSR TLVSTPSSGD  780
SSVKLSSDNS VMLNQTNSAP KSNLMLKGIQ PAVTPKGINF FSFRKSSVND SLDKLKLPFS  840
CDDGSDSSVN GRQYPLDEQK HSCTTSKTLP SSSVSLAQSP DPSSSRFHKD TAHSAQKALL  900
STLAFAAKHE SRVKQNELIR DPSGGTEIDK GIRENSLIGG SQNGLAKVSR IVELLSSFSG  960
KSKQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1492496KKKRR
2492497KKKRRL
3492508KKKRRLPTKERRAKKKL
4495507RRLPTKERRAKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024017174.10.0uncharacterized protein LOC21409920 isoform X1
TrEMBLA0A2P5BDH40.0A0A2P5BDH4_PARAD; Zinc finger, CCCH-type
STRINGXP_010090066.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66502323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.26e-07C3H family protein