PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK20942.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bZIP
Protein Properties Length: 434aa    MW: 47427.3 Da    PI: 6.5634
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK20942.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.44.2e-10227285563
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  l+     l++e+
  PK20942.1 227 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAEN 285
                9*********************************************9998888777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.8E-16223287IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.932225288IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.1E-8225281No hitNo description
PfamPF001701.0E-8227281IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.0E-10227278No hitNo description
CDDcd147031.03E-24228277No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MDKEKSPGHG GGLPPPSGRY SGFSSGGSNF NVKPEPSTSS FPPLAPGSSS EAGHFGHGLA  60
TDSGRFSHDI SRMPDNPPRN LGHRRAHSEI LTLPDDISFD SDLGVVGGAD GPSFSDETEE  120
DLLSMYLDMD KFNSSSATSA FQLGEPSSAG ATPMQTAMSG VATSSAEVAT GANERPRVRH  180
QHSQSMDGST TIKPEMLVPG SEDISSVDSK KAISAAKLAE LALIDPKRAK RIWANRQSAA  240
RSKERKMRYI AELERKVQTL QTEATSLSAQ LTLLQRDTNG LTAENSELKL RLQTMEQQVH  300
LQDALNDALK EEIQHLKVMT GQPMPNSGPM MNFSSFGGSQ QFYPNNHAMH TLLTAQQFQQ  360
LQIHSQKPQH QFQQHQLHQL QQQHMQQEQQ QQQQQQQQQQ QQQQSGDMKL RGSMASPSQK  420
DNSSDANSSA TKDS
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00126DAPTransfer from AT1G06070Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015867590.10.0probable transcription factor PosF21
RefseqXP_015867591.10.0probable transcription factor PosF21
RefseqXP_015867592.10.0probable transcription factor PosF21
SwissprotQ040881e-162POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A2P5G0N30.0A0A2P5G0N3_TREOI; Basic-leucine zipper transcription factor
STRINGEMJ235790.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55173249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.11e-166bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]