PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK20989.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

MYB

Protein Properties

Length: 139aa MW: 16591.7 Da PI: 10.5863

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK20989.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.6	5.3e-17	4	49	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+++G+ +W++Ia+++ gR++k+c++rw++ PK20989.1 4 RGHWRPAEDAKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 49 899***************************.*********996 PP
2	Myb_DNA-binding	59.5	7.3e-19	56	99	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ PK20989.1 56 RRAFTEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 99 678*****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	20.734	1	50	IPR017930	Myb domain
SMART	SM00717	2.4E-14	3	52	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.29E-29	3	97	IPR009057	Homeodomain-like
Pfam	PF00249	1.3E-16	4	49	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.5E-27	5	57	IPR009057	Homeodomain-like
CDD	cd00167	1.09E-11	7	48	No hit	No description
PROSITE profile	PS51294	27.372	51	105	IPR017930	Myb domain
SMART	SM00717	8.9E-15	55	103	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-15	56	98	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.2E-22	58	104	IPR009057	Homeodomain-like
CDD	cd00167	2.05E-10	58	98	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
XCTRGHWRPA EDAKLKELVA LYGPQNWNLI AEKLEGRSGK SCRLRWFNQL DPRINRRAFT 60 EEEEERLMQA HRIYGNKWAM IARLFPGRTD NAVKNHWHVI MARKYREQSS AYRRRKLSQS 120 IYRRIEENSN FVVCGEAIP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	7e-35	2	104	5	107	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269\|PubMed:19542355}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00222	DAP	Transfer from AT1G69560	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018846121.1	1e-88	PREDICTED: myb-related protein Hv33-like
Swissprot	Q9SEZ4	1e-77	MY105_ARATH; Transcription factor MYB105
TrEMBL	A0A2P5G0F7	1e-94	A0A2P5G0F7_TREOI; MYB transcription factor
STRING	cassava4.1_032253m	2e-87	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF230	34	243

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	6e-80	myb domain protein 105

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]