PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK21020.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GRAS
Protein Properties Length: 73aa    MW: 8456.43 Da    PI: 8.9183
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK21020.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS551.6e-17369290358
       GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                +++ei+n+va eg +r+erhe++ +Wr++l++aGF+ + l  k  +qa+++l+ ++ dgy++ +e+g+l
  PK21020.1   3 FAEEIRNIVAFEGPSRIERHERVDQWRRQLGRAGFQVLGL--KCLSQARMMLSVYGCDGYTLSSEKGCL 69 
                899*********************************9887..589**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098510.425167IPR005202Transcription factor GRAS
PfamPF035145.7E-15369IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
HHFAEEIRNI VAFEGPSRIE RHERVDQWRR QLGRAGFQVL GLKCLSQARM MLSVYGCDGY  60
TLSSEKGCLD RKX
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089231.19e-39DELLA protein RGL1
SwissprotG7L1662e-18RAM1_MEDTR; GRAS family protein RAM1
TrEMBLW9QHI82e-37W9QHI8_9ROSA; Uncharacterized protein
STRINGXP_010089231.13e-38(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2555633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.12e-15GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]