 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | PK21037.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
|
||||||||
| Family | FAR1 | ||||||||
| Protein Properties | Length: 173aa MW: 20418.1 Da PI: 7.2497 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 69.9 | 6e-22 | 67 | 152 | 1 | 88 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88
+fYn+YA++vGF +rksk +k ++g +++rt++Cs+eg+ +++k++ rr++aetr gC a++kv +++gk++v ++ eH+H
PK21037.1 67 NFYNAYAYKVGFGIRKSKRYKD-KHGVMINRTLYCSCEGYCQNDKRD-AIVRRHHAETRFGCLARMKVDCRQTGKYHVVEIIPEHTHV 152
6*****************9998.7788****************9999.9999***********************************5 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 1.3E-18 | 67 | 152 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 173 aa Download sequence Send to blast |
MDDHNKTMEI EFQSRRKLEF ERGEEEINED KLVDNNIKSI EVIHFEISEK LIPNIGMEFE 60 TEDEAYNFYN AYAYKVGFGI RKSKRYKDKH GVMINRTLYC SCEGYCQNDK RDAIVRRHHA 120 ETRFGCLARM KVDCRQTGKY HVVEIIPEHT HVTSTVGFCA LNKTHSNIIR FTN |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015897844.1 | 4e-47 | protein FAR1-RELATED SEQUENCE 5-like | ||||
| Refseq | XP_024930861.1 | 3e-46 | protein FAR1-RELATED SEQUENCE 5-like | ||||
| STRING | XP_008246048.1 | 4e-36 | (Prunus mume) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF3045 | 14 | 49 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G59470.2 | 3e-24 | FAR1 family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|