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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PK21058.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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| Family | MYB | ||||||||
| Protein Properties | Length: 121aa MW: 14218.4 Da PI: 9.979 | ||||||||
| Description | MYB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 57.6 | 2.8e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd++l++++k++G g+W++ ++ g+ R++k+c++rw +yl
PK21058.1 14 KGAWTKEEDQRLIHYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
79******************************99************97 PP
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| 2 | Myb_DNA-binding | 60.9 | 2.7e-19 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg++T++Edel+++++ +lG++ W++Ia++++ gRt++++k++w+++
PK21058.1 67 RGNFTEDEDELIINLHSLLGNK-WSLIASRLP-GRTDNEIKNYWNTH 111
89********************.*********.************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.10.60 | 9.3E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 18.156 | 9 | 61 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 1.19E-30 | 13 | 108 | IPR009057 | Homeodomain-like |
| SMART | SM00717 | 4.2E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
| Pfam | PF00249 | 1.1E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 2.58E-10 | 16 | 61 | No hit | No description |
| PROSITE profile | PS51294 | 28.643 | 62 | 116 | IPR017930 | Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 9.7E-29 | 65 | 116 | IPR009057 | Homeodomain-like |
| SMART | SM00717 | 5.8E-18 | 66 | 114 | IPR001005 | SANT/Myb domain |
| Pfam | PF00249 | 1.2E-17 | 67 | 111 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 8.63E-12 | 69 | 112 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 121 aa Download sequence Send to blast |
MGRSPCCEKE HTNKGAWTKE EDQRLIHYIK LHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEDEDELIIN LHSLLGNKWS LIASRLPGRT DNEIKNYWNT HIKRKLYSRG 120 I |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1a5j_A | 7e-31 | 14 | 116 | 7 | 108 | B-MYB |
| 1h8a_C | 1e-30 | 13 | 116 | 26 | 128 | MYB TRANSFORMING PROTEIN |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcription factor involved in the negative regulation of flavonol biosynthesis. Represses the early phenylpropanoid genes, phenylalanine ammonia-lyase (PAL), cinnamate 4-hydroxylase (C4H) and 4-coumarate-CoA ligase (4CL), as well as the flavonoid-specific genes, flavonoid 3'-hydroxylase (F3'H) and dihydroflavonol 4-reductase (DFR) (PubMed:24319076). Plays a role in seed germination inhibition. Negatively regulates the expression of the abscisic acid (ABA) signaling transcription factor ABI5 in seeds (PubMed:25053018). {ECO:0000269|PubMed:24319076, ECO:0000269|PubMed:25053018}. | |||||
| UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. | |||||
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. | |||||
| UniProt | INDUCTION: Induced by abscisic acid (ABA) and osmotic stress (PubMed:25053018). Induced by salt stress (PubMed:24319076, PubMed:25053018). {ECO:0000269|PubMed:24319076, ECO:0000269|PubMed:25053018}. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020212475.1 | 5e-85 | myb-related protein 308 | ||||
| Swissprot | Q42379 | 1e-78 | MYB7_ARATH; Transcription factor MYB7 | ||||
| Swissprot | Q9SZP1 | 2e-78 | MYB4_ARATH; Transcription repressor MYB4 | ||||
| TrEMBL | A0A2P5AGF6 | 5e-84 | A0A2P5AGF6_PARAD; MYB transcription factor | ||||
| STRING | XP_007137818.1 | 1e-82 | (Phaseolus vulgaris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF264 | 34 | 221 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G16720.1 | 5e-81 | myb domain protein 7 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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