PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK21131.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 376aa    MW: 42718.1 Da    PI: 8.9275
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK21131.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.59.7e-134781897
               --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
               +pk f  ++ ++   s ++ l+ + g +Wev l  +k+s++ +++++GW++F++   L  g f+vF+++g+s+f  +v +f
  PK21131.1  4 IPKAFWVKYCSS--LSSQVFLKLPCGSTWEVGL--TKSSDGnVWIEEGWNKFAQHCSLSYGNFLVFRYEGDSQF--HVIIF 78
               899999999433..4557***************..8888888****************************9999..88877 PP
2B362.57e-20284367686
                ..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
         B3   6 tpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                 ps v+++ ++++p  fa+++   +++k  + +++l+ e+gr+W+v++++  rk+ +++ +++GWk F+++n+Lk+gD++ F l++
  PK21131.1 284 QPSGVGANYNVIIPSIFASQYllnNINK--HGDVILKVEDGRTWSVRYCFsrRKRASKTKFQRGWKAFAQENDLKVGDVCAFVLSK 367
                6899999*99************865554..448***************9965555555************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.592181IPR003340B3 DNA binding domain
SMARTSM010190.14181IPR003340B3 DNA binding domain
SuperFamilySSF1019361.57E-16379IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-16379IPR015300DNA-binding pseudobarrel domain
CDDcd100177.46E-12479No hitNo description
PfamPF023626.4E-10478IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.4E-21268368IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-19273369IPR015300DNA-binding pseudobarrel domain
CDDcd100177.87E-19277367No hitNo description
PROSITE profilePS5086314.311279376IPR003340B3 DNA binding domain
SMARTSM010191.1E-7279376IPR003340B3 DNA binding domain
PfamPF023627.5E-18283367IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
XQQIPKAFWV KYCSSLSSQV FLKLPCGSTW EVGLTKSSDG NVWIEEGWNK FAQHCSLSYG  60
NFLVFRYEGD SQFHVIIFNL TTTEIDYPSN PNNWGHHNVD INDDDESTEV LDSFPRNSKT  120
SDKSPLPCSQ LHKKIRASVP CKPQSHNLSL LRISTPKVME KESLSSKVDK SAPKRYQKPS  180
SDIEKHNADD TIDGISIQAM DKSPIPCSAR PHKKMKTSPD CGTKSKVMKW EFSDKECGES  240
SLPEWMKPEI FLSRQILSAN EKAEAVKRVK DFQSKDPFFM VYIQPSGVGA NYNVIIPSIF  300
ASQYLLNNIN KHGDVILKVE DGRTWSVRYC FSRRKRASKT KFQRGWKAFA QENDLKVGDV  360
CAFVLSKNIG IILFEX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5BZ388e-56A0A2P5BZ38_PARAD; B3 DNA binding domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14300416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-32B3 family protein