PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK21234.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 574aa    MW: 61623.4 Da    PI: 5.9608
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK21234.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27.2e-09390438355
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  PK21234.1 390 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 438
                58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.42E-11385442No hitNo description
SuperFamilySSF474598.37E-17385455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485387437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16388455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-6390438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10393443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MDMGEKDKFE LDNKNEDHMS YSSGMASDWR FDGSNLANTS MGLVQAANSM AIGKGDLVGS  60
SSCSSAPMVD SFVSPLWDHT TTNPQNLGFC DMNIQNNASN FNSLGIRKGS SPASMRNGVD  120
RSHDMCWNPS TPISKGGIFL PNMPGMIPQS LSQLPTDSAF IERAARFSCF NGGNFSDMVN  180
PFAIQDTVNL YPRGGGGKVQ GGQDVLAGNG LKQVMSGVHS QKGQLNMSEV SKDTSLTAEL  240
GCTEGSPLTN ERKNDSLVRS HDEAKQCVGG SGNDSDEAEF SNGAGGGVEE PSILEGTRGG  300
ELSAKGLGSK KRKRNGQDSD PDQAKGASQQ HGESTMDHNT EQHQKGDQNP STTNNKASGK  360
HSKQQQGSQG SDPPKEEYIH VRARRGQATN SHSLAERVRR EKISERMKFL QDLVPGCSKV  420
TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPRLEFNIE GLLAKDMLQS RVGTSSSLAF  480
SPDMHMPYPT LQPPSQGLIQ ASLAGLGSTS DVIRRAISSQ LTPLSGGFKE PTQIPNVWED  540
ELNNVVQMSF GTRSSPSSQD GDGSMPTGQM KVEL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1468114e-87EF146811.1 Populus trichocarpa clone WS01214_F06 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010091656.10.0transcription factor bHLH49
TrEMBLA0A2P5DTY30.0A0A2P5DTY3_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_010091656.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72493248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-126bHLH family protein