PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK21378.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family WRKY
Protein Properties Length: 353aa    MW: 39382.3 Da    PI: 6.6523
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK21378.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.33.2e-23159219259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                +Dg +WrKYGqKe+ ++e+pr+Y+rCt +   gC+++++v++ +++pk+ ++tY geH+++
  PK21378.1 159 EDGQAWRKYGQKEILNAEYPRAYFRCTRKydqGCRATRQVQQIQDNPKLYQTTYIGEHTCK 219
                8**************************998899**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.8E-24146220IPR003657WRKY domain
SuperFamilySSF1182906.28E-23152219IPR003657WRKY domain
PROSITE profilePS5081120.208153216IPR003657WRKY domain
SMARTSM007749.2E-36158220IPR003657WRKY domain
PfamPF031061.8E-22159219IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
XVSGQMGTCI LPQNLSKRLI KELIQGKEMA TKLQLMLHDH NNKPLVEENI GFGSVSSSSS  60
SSAEELASKI LNSFTQTLSV VTGYNNDNTI NNIIHSNASD QTSQVNPHDQ ASHCDDPSSD  120
DYGAESKIKR SSHGIKDRRG CYKRRKNSQS WTTTVSTLED GQAWRKYGQK EILNAEYPRA  180
YFRCTRKYDQ GCRATRQVQQ IQDNPKLYQT TYIGEHTCKN ILKPPQMIIK DSDLDNNLMN  240
VITSTTILEE VKPIISSSIT TNDTSSLSDD HHNKLSLDHH HHHNNSDHEI INLWPSELKD  300
LELSDPSMGL LSSSLGVSAS NNDHDIVSIM FSFGDRTINT TNCSTSGTNS HSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-25152219269OsWRKY45
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5DCX31e-115A0A2P5DCX3_PARAD; WRKY domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47003056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.15e-40WRKY DNA-binding protein 70