PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK21422.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

ZF-HD

Protein Properties

Length: 114aa MW: 12313 Da PI: 8.3982

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK21422.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	105.1	4.5e-33	32	87	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +vrY eC+kNhAa +Gg+avDGC+Efm+s g egt+aal+CaACgCHRnFHRre+++ PK21422.1 32 SVRYGECQKNHAAGVGGYAVDGCREFMAS-GVEGTTAALTCAACGCHRNFHRREPDQ 87 79************************9.999*******************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	2.1E-30	33	85	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	7.0E-27	34	84	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	3.0E-12	35	86	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	25.573	35	84	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence Send to blast
IKLIIIVVVV MRKRQVVVRR EEVSRSMGVV MSVRYGECQK NHAAGVGGYA VDGCREFMAS 60 GVEGTTAALT CAACGCHRNF HRREPDQTPS TTTSHHHHEV VCDSSSSPSS SNGL

Functional Description ? help Back to Top
Source	Description
UniProt	Inhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. {ECO:0000269\|PubMed:21455630}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021889716.1	4e-43	mini zinc finger protein 2
Swissprot	Q9LJW5	6e-35	MIF2_ARATH; Mini zinc finger protein 2
TrEMBL	A0A061EGD2	1e-39	A0A061EGD2_THECC; Mini zinc finger 2 isoform 2 (Fragment)
TrEMBL	A0A1R3GV65	5e-40	A0A1R3GV65_9ROSI; Uncharacterized protein
STRING	evm.model.supercontig_140.56	1e-42	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1550	34	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74660.1	9e-18	mini zinc finger 1

Publications ? help Back to Top
Bollier N, et al. At-MINI ZINC FINGER2 and Sl-INHIBITOR OF MERISTEM ACTIVITY, a Conserved Missing Link in the Regulation of Floral Meristem Termination in Arabidopsis and Tomato. Plant Cell, 2018. 30(1): p. 83-100 [PMID:29298836]