PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK21617.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

LBD

Protein Properties

Length: 95aa MW: 10420.8 Da PI: 9.5457

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK21617.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	62.6	9.9e-20	50	95	1	46
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkll 46 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l PK21617.1 50 PCAACKLLRRRCAEECPFSPYFSPQEPQKFAAVHKVFGASNVSKML 95 7*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.804	49	95	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-19	50	95	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 95 aa Download sequence Send to blast
XSVVLLPPPN NINNNININI SDHHQNQIMG RRLVQSFGPA AAGTLNTITP CAACKLLRRR 60 CAEECPFSPY FSPQEPQKFA AVHKVFGASN VSKML

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-19	40	95	1	56	LOB family transfactor Ramosa2.1
5ly0_B	4e-19	40	95	1	56	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018623062.1	2e-36	PREDICTED: LOB domain-containing protein 15-like isoform X1
Swissprot	Q8L5T5	2e-30	LBD15_ARATH; LOB domain-containing protein 15
Swissprot	Q9AT61	4e-30	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A2P5CYR2	2e-36	A0A2P5CYR2_TREOI; Lateral organ boundaries domain containing protein
STRING	XP_009589291.1	9e-36	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1334	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	8e-33	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288] Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]