PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK21701.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

M-type_MADS

Protein Properties

Length: 151aa MW: 17362.6 Da PI: 10.2187

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK21701.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	76.8	1.7e-24	35	78	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 r e+ snrqvt+skRrngilKKA+ELS+LCd+++a+++fs++gk PK21701.1 35 RLESISNRQVTYSKRRNGILKKAKELSILCDIDIALLMFSPSGK 78 67999*************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	23.885	26	86	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.3E-27	26	85	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.28E-26	27	120	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.0E-20	28	48	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.1E-22	37	80	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.0E-20	48	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.0E-20	63	84	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
XLVGFAQSKY RDCSLTHRQN FLPPQDGKLK LKIQRLESIS NRQVTYSKRR NGILKKAKEL 60 SILCDIDIAL LMFSPSGKPT LYQGERSNFE EVITKFSQLT CQERAKRKLE SLEALKKTFK 120 KLDHDVNIPD FMGSSSQTIE DSMSQVRVLQ X

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	2e-15	27	117	2	90	MEF2 CHIMERA
6byy_B	2e-15	27	117	2	90	MEF2 CHIMERA
6byy_C	2e-15	27	117	2	90	MEF2 CHIMERA
6byy_D	2e-15	27	117	2	90	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024019573.1	1e-65	agamous-like MADS-box protein AGL65 isoform X1
Refseq	XP_024019574.1	1e-65	agamous-like MADS-box protein AGL65 isoform X2
Swissprot	Q7X9I0	1e-57	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A067EKC3	4e-65	A0A067EKC3_CITSI; Uncharacterized protein (Fragment)
TrEMBL	A0A218VXH5	1e-64	A0A218VXH5_PUNGR; Uncharacterized protein
TrEMBL	A0A2P5F713	7e-65	A0A2P5F713_TREOI; MADS-box transcription factor
STRING	XP_006477467.1	1e-62	(Citrus sinensis)
STRING	EMJ11778	2e-63	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2750	33	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	6e-60	AGAMOUS-like 65

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]