PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK21748.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

bHLH

Protein Properties

Length: 430aa MW: 47475.2 Da PI: 6.9308

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK21748.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.4	0.0006	290	328	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq PK21748.1 290 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 328 6677888999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.312	278	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.44E-6	288	332	No hit	No description
SuperFamily	SSF47459	7.07E-10	288	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.0E-7	292	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MAAGNPNWWN YNTMRPPTQP VVLPSPNFLY PQFIPTTTTT TTTTTTSNNS SSSNNSSSNS 60 SHHHHQHLDH QLPNNNNMPS WQDHNNQQDQ LPESWSQLLL GGLVGEEEKA INMMNHFQVK 120 KLENWEDHNH HQMQLSTNNS NHQQGSNNIE VKQENNTAAA AAYMYGHETQ EYHHHLLHEQ 180 VNKLGSCSTT TTPWLLSSQH PLVMANNNNN NNNSNSSPKS SSCVTSFSSN MLDFSNIKPH 240 HDPANTTTTT THTPLLQDRS SECNSTATGG APLKKARVQP SSTQTTFKVR KEKLGDRITA 300 LHQLVSPFGK TDTASVLLEA IGYIRFLQSQ IEALSLPYLG SGSGNMRQQQ SVHGERNCMF 360 PEDPGQLLND NCMKRKGAPD QQDCVEEPKK DLKSRGLCLV PVSCTLQVGS DNGADYWAPA 420 LGGGGGCGFR

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MAAGNPNWWN YNTMRPPTQP VVLPSPNFLY PQFIPTTTTT TTTTTTSNNS SSSNNSSSNS  60
SHHHHQHLDH QLPNNNNMPS WQDHNNQQDQ LPESWSQLLL GGLVGEEEKA INMMNHFQVK  120
KLENWEDHNH HQMQLSTNNS NHQQGSNNIE VKQENNTAAA AAYMYGHETQ EYHHHLLHEQ  180
VNKLGSCSTT TTPWLLSSQH PLVMANNNNN NNNSNSSPKS SSCVTSFSSN MLDFSNIKPH  240
HDPANTTTTT THTPLLQDRS SECNSTATGG APLKKARVQP SSTQTTFKVR KEKLGDRITA  300
LHQLVSPFGK TDTASVLLEA IGYIRFLQSQ IEALSLPYLG SGSGNMRQQQ SVHGERNCMF  360
PEDPGQLLND NCMKRKGAPD QQDCVEEPKK DLKSRGLCLV PVSCTLQVGS DNGADYWAPA  420
LGGGGGCGFR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010100638.1	1e-163	transcription factor bHLH68
Swissprot	Q8S3D1	6e-93	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A2P5FSX3	0.0	A0A2P5FSX3_TREOI; Myc-type, basic helix-loop-helix (BHLH) domain containing protein
STRING	XP_010100638.1	1e-162	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1223	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	4e-84	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]