PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK21766.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 261aa    MW: 30336.5 Da    PI: 9.9865
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK21766.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.58.9e-121295998
               HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3  9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
               d  +  +  lp kf++  g+      t+++  + + +W++ l    k+g+ +l++GW eFvk  +L  g ++ F++ grs+f  + ++++
  PK21766.1 12 DDYSMTQWALPPKFVRLQGHT--LAETVSFVLPCSHKWKIGL--VSKDGKLYLKEGWPEFVKHYQLSYGYMLKFTYGGRSKF--NTSIYD 95
               445555689******777754..6779***************..99999****************************99999..666665 PP
2B356.35.6e-181812581799
                E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 lp +f++++ ++k++++tl++     ++W+v+l   ++s+++ + +GW++F  an L++gD +vF++ +r+ ++l+v++fr+
  PK21766.1 181 QLPEQFIRSYLEPKTQQVTLKV---GTKQWTVTL--LNCSSGFSFCAGWSKFLAANSLCTGDACVFEVLKRKPAKLRVTIFRN 258
                69********888888766664...55*******..*******************************9999**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.461497IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-15599IPR015300DNA-binding pseudobarrel domain
CDDcd100172.58E-10595No hitNo description
Gene3DG3DSA:2.40.330.101.1E-13799IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.8E-5797IPR003340B3 DNA binding domain
PfamPF023626.9E-91194IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-20158259IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-18159259IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.633165259IPR003340B3 DNA binding domain
SMARTSM010192.0E-10166259IPR003340B3 DNA binding domain
CDDcd100174.31E-14166257No hitNo description
PfamPF023621.9E-14181258IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
XMTSFCFFKI HDDYSMTQWA LPPKFVRLQG HTLAETVSFV LPCSHKWKIG LVSKDGKLYL  60
KEGWPEFVKH YQLSYGYMLK FTYGGRSKFN TSIYDTSTCE IDYTRFSSPN FTREKSDTEG  120
MSKKAKAENH TTKNWKQSRH VGAYNTYEGT KAYEEASRFP SKHPVFRRIL RTDKCHRYKQ  180
QLPEQFIRSY LEPKTQQVTL KVGTKQWTVT LLNCSSGFSF CAGWSKFLAA NSLCTGDACV  240
FEVLKRKPAK LRVTIFRNDD V
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.16e-16B3 family protein