PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK22200.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GeBP
Protein Properties Length: 131aa    MW: 15332.2 Da    PI: 11.1917
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK22200.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57357.73.4e-1816106298
     DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                +++rl++e+Dei lL+ +++  ++    +s+ ++   e ++ +++ k+++sq+++K+rrL+ K++++ ++     +  ++++hd+   ++++kiWg+
  PK22200.1  16 NSRRLFTESDEIHLLKSFLKLSKQSS-PSSAITSPNLERIQTRLDHKFTHSQIIDKLRRLRIKYHREART-----KSLIKTPHDTRLHKIARKIWGK 106
                579******************65554.4555788999****************************99998.....6789****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.1E-1618105IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
XLRSPTKSPP PSSNGNSRRL FTESDEIHLL KSFLKLSKQS SPSSAITSPN LERIQTRLDH  60
KFTHSQIIDK LRRLRIKYHR EARTKSLIKT PHDTRLHKIA RKIWGKKAQQ LPKEEHAKEE  120
KEKEKEMLKG X
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015873627.12e-35probable transcription factor At1g61730
TrEMBLA0A2P5C2Q71e-32A0A2P5C2Q7_PARAD; Uncharacterized protein
STRINGXP_006424433.15e-30(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1829633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.22e-09DNA-binding storekeeper protein-related transcriptional regulator