PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK22221.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

NAC

Protein Properties

Length: 74aa MW: 8871.11 Da PI: 11.2278

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK22221.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	101.6	1.1e-31	3	74	55	127
NAM 55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + +++g++ktLvfy+grap+g+k+dW+mheyr PK22221.1 3 QSEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRN-AFKKIGMRKTLVFYRGRAPHGQKSDWIMHEYR 74 579**********************************9.8899*************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	34.846	1	74	IPR003441	NAC domain
SuperFamily	SSF101941	2.62E-30	3	74	IPR003441	NAC domain
Pfam	PF02365	5.5E-16	6	74	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 74 aa Download sequence Send to blast
TPQSEWYFFS HKDRKYPTGS RTNRATNAGF WKATGRDKCI RNAFKKIGMR KTLVFYRGRA 60 PHGQKSDWIM HEYR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	5e-28	3	74	73	144	NAC domain-containing protein 19
3swm_B	5e-28	3	74	73	144	NAC domain-containing protein 19
3swm_C	5e-28	3	74	73	144	NAC domain-containing protein 19
3swm_D	5e-28	3	74	73	144	NAC domain-containing protein 19
3swp_A	5e-28	3	74	73	144	NAC domain-containing protein 19
3swp_B	5e-28	3	74	73	144	NAC domain-containing protein 19
3swp_C	5e-28	3	74	73	144	NAC domain-containing protein 19
3swp_D	5e-28	3	74	73	144	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:20197506}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009757635.1	1e-48	PREDICTED: protein BEARSKIN1
Refseq	XP_016556495.1	1e-47	PREDICTED: protein BEARSKIN2
Swissprot	Q9SV87	2e-46	BRN2_ARATH; Protein BEARSKIN2
TrEMBL	A0A067E845	2e-46	A0A067E845_CITSI; Uncharacterized protein (Fragment)
TrEMBL	A0A1U7V7B1	3e-47	A0A1U7V7B1_NICSY; protein BEARSKIN1
TrEMBL	A0A1U8FL53	2e-46	A0A1U8FL53_CAPAN; protein BEARSKIN2
TrEMBL	A0A2G3AIX3	2e-46	A0A2G3AIX3_CAPAN; Protein BEARSKIN2
TrEMBL	A0A2G3DGI5	2e-46	A0A2G3DGI5_CAPCH; Protein BEARSKIN2
TrEMBL	A0A438CA78	2e-46	A0A438CA78_VITVI; Protein BEARSKIN2
STRING	Lus10013782	1e-46	(Linum usitatissimum)
STRING	Solyc06g063430.1.1	5e-47	(Solanum lycopersicum)
STRING	XP_009757635.1	5e-48	(Nicotiana sylvestris)
STRING	XP_009761820.1	4e-47	(Nicotiana sylvestris)
STRING	XP_009602081.1	8e-47	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8752	33	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	6e-49	NAC domain containing protein 70

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]