PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK22271.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C3H
Protein Properties Length: 490aa    MW: 52820.4 Da    PI: 7.4048
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK22271.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.61.6e-11127151226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                +++ C ++++t tCk+Gd+CkF H+
  PK22271.1 127 GEKDCVHYMQTRTCKFGDSCKFDHP 151
                7889********************8 PP
2zf-CCCH31.92.3e-10178203227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                + + C+++ +t  Ck+G rCkF+H++
  PK22271.1 178 GVSDCPYYVKTQRCKFGLRCKFNHPK 203
                6789********************96 PP
3zf-CCCH38.42.1e-12225249327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++C f+++tGtCk+G++C+F+H++
  PK22271.1 225 EPPCAFYLKTGTCKFGSTCRFNHPK 249
                79*********************96 PP
4zf-CCCH36.21e-11301326126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                ++++ C+f+++tG CkyG +C+++H+
  PK22271.1 301 PGEPDCPFYLKTGSCKYGITCRYSHP 326
                5789*********************9 PP
5zf-CCCH39.31.1e-12381402526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C+++++tG+Ck+G+rCkF+H+
  PK22271.1 381 ECDHYMKTGECKFGERCKFHHP 402
                7********************8 PP
6zf-CCCH38.81.6e-12435457527
                --SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                +C+++++tG CkyG++CkF H+p
  PK22271.1 435 ICPYYLKTGACKYGPTCKFDHPP 457
                7********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.2E-4125152IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.817125153IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-5126152IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-8127151IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4131150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.385176204IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-4176203IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-8178203IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-5180205IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4182204IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-5222249IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.183222250IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-10225249IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6226250IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-5227248IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.976300328IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-7300327IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-9302326IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-5305328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4306326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.328376404IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-6376403IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-6377405IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-10381402IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-5382402IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-7430457IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.258430458IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-6433457IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-10435457IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-6435455IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
YQRRGLVTGA TSGSYTEPYF PDSLASDPQL AATMYLGQAD ALNAYAAASR TNSHLVSLAS  60
WTAAAGAAST EDPVTGIKRT SEALYHPTVL GAHNTMGQEA WYSANALAKR FRYDGAGNLP  120
IYPQRPGEKD CVHYMQTRTC KFGDSCKFDH PIWVPEGGIP DWKEVPLIGS EDLPERPGVS  180
DCPYYVKTQR CKFGLRCKFN HPKETLAAAA VGNGDPSALP ERPTEPPCAF YLKTGTCKFG  240
STCRFNHPKD ILLPSTGQEN GSSQYETAKM EGAPGDSKSV KSSDPFTPAL YYNTKELPVR  300
PGEPDCPFYL KTGSCKYGIT CRYSHPDRNA ALGHALVASP AAGLNIGVVN PVASLYQTID  360
PRLAQMGVGP TVYPQRPGQM ECDHYMKTGE CKFGERCKFH HPIDRSAPTL ATIQAQQMSV  420
KLTLAGLPRR EGSIICPYYL KTGACKYGPT CKFDHPPPGE VMGLGGTQGT STSGGEEGKG  480
DEENGGESVQ
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818009e-63LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBankLN7132559e-63LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024021124.10.0zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A2P5AP680.0A0A2P5AP68_TREOI; Zinc finger, CCCH-type
TrEMBLA0A2P5BR190.0A0A2P5BR19_PARAD; Zinc finger, CCCH-type
STRINGXP_010095999.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)