PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK22311.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GRAS
Protein Properties Length: 91aa    MW: 10381.3 Da    PI: 8.4985
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK22311.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS54.22.8e-171289187271
       GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                 ++ ++++rv++gE+laV++    h l+d++++       ++ lv +l+P+++++veq++   s+sFl+rf+ +l+yys++fds+
  PK22311.1  12 LNVGVSTFRVRRGETLAVHWLR--HCLYDSTGPDWR----TIGLVEELRPRIFTLVEQDIAQ-SGSFLDRFVGSLQYYSTMFDSI 89 
                5677899*************99..888888887777....*******************998.899******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098510.58191IPR005202Transcription factor GRAS
PfamPF035149.7E-151289IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
XPVVRNPKTG LLNVGVSTFR VRRGETLAVH WLRHCLYDST GPDWRTIGLV EELRPRIFTL  60
VEQDIAQSGS FLDRFVGSLQ YYSTMFDSIG X
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-231390200277Protein SCARECROW
5b3h_D7e-231390200277Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021814842.13e-35protein SCARECROW-like
SwissprotQ9AVK41e-22SCR_PEA; Protein SCARECROW
TrEMBLA0A2P5CNN82e-49A0A2P5CNN8_PARAD; GRAS transcription factor
STRINGEMJ019784e-34(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.13e-24GRAS family protein