PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK22319.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 100aa    MW: 11497.9 Da    PI: 9.0221
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK22319.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.66.3e-1528971084
               HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
         B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84
                +++    lpkkf+e+h g+k e   +tle   +++W+v++    + + + +++GW +F  an L++gD++vF++
  PK22319.1 28 KHNRYKQQLPKKFIESHVGVKSE--AVTLE-VGSKEWSVNI--VSCNSICCFSGGWFNFLAANSLCSGDVCVFEV 97
               445555689********989655..45555.478*******..66666699**********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-171498IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-171598IPR015300DNA-binding pseudobarrel domain
CDDcd100174.98E-101896No hitNo description
PROSITE profilePS5086311.20919100IPR003340B3 DNA binding domain
PfamPF023623.5E-113098IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
XRHSKAVIEA RRFYSEYPHF YRVIRTDKHN RYKQQLPKKF IESHVGVKSE AVTLEVGSKE  60
WSVNIVSCNS ICCFSGGWFN FLAANSLCSG DVCVFEVITK
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.11e-11related to vernalization1 1