PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK22356.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HSF
Protein Properties Length: 386aa    MW: 42549.2 Da    PI: 5.9956
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK22356.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.33.2e-35151062102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F++k+y++++d+ +++lisw + +nsf+v+++ +f++k+Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+k+ll++i 
     PK22356.1  15 FVMKTYQMVNDPMTDSLISWGHANNSFIVIEPLDFSQKILPAFFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEWFLRGQKHLLKNIT 102
                   9********************999*****************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   rkk+
     PK22356.1 103 RKKH 106
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.4E-5211104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.5E-3712104IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.72E-3312104IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.9E-3015104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-171538IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-175365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-176678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MGMEATTSNN VIAPFVMKTY QMVNDPMTDS LISWGHANNS FIVIEPLDFS QKILPAFFKH  60
NNFSSFVRQL NTYGFRKVDP DRWEFANEWF LRGQKHLLKN ITRKKHCNNN SGSSSTNTTT  120
TSNRGVISHT TFSASKQLDP TELDDEEIVM EITRLKEEQR TLEEELQGMT KRLETTERRP  180
QQMMAFLYKV VEDPDILPRM MTQNKNHLTE KKRRLAISSA TTSSNSSGGG AATAPTTAAG  240
TSTNNSLKTE DEDDVVASEA GFELDSFYNF NQSSSSSPEY PPQPRWGAQR PARFISQEGF  300
YNGYPGNSQN PISAVSVSRV PESMAAMASS SMPAPARFVS GYGNGSSSNS NSNSGQLGYF  360
TGVVAGMESS DPAPPPYPFS LFGGGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-24110416129Heat shock factor protein 1
5d5v_B2e-24110416129Heat shock factor protein 1
5d5v_D2e-24110416129Heat shock factor protein 1
5hdg_A2e-24121047110Heat shock factor protein 1
5hdn_A2e-24121047110Heat shock factor protein 1
5hdn_B2e-24121047110Heat shock factor protein 1
5hdn_C2e-24121047110Heat shock factor protein 1
5hdn_D2e-24121047110Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015898330.11e-121heat stress transcription factor C-1
TrEMBLA0A2P5CC581e-167A0A2P5CC58_PARAD; Heat shock transcription factor
STRINGXP_010088821.11e-118(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83673038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-85heat shock transcription factor C1