PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK22475.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family Trihelix
Protein Properties Length: 158aa    MW: 16983.6 Da    PI: 9.8988
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK22475.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.74.7e-1640127186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +W++  + +Li+a  e+  +l+rg+lk+++W+ev++ +      ++  ++ +qCk++++ ++k+yk +k+  +++  +  s++p++d+l+
  PK22475.2  40 CWSEGATSVLIDAWGERYLELSRGNLKQKHWKEVADIVsgrdDYTKAAKTDIQCKNRIDTVKKKYKLEKAKLSSG--GGPSKWPFYDRLD 127
                7*************************************97666666778999*********************97..67778******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.4E-2738129No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
XAAPPQQPVT QNALTLALPI QTRNGVGERG SGGGGGREDC WSEGATSVLI DAWGERYLEL  60
SRGNLKQKHW KEVADIVSGR DDYTKAAKTD IQCKNRIDTV KKKYKLEKAK LSSGGGPSKW  120
PFYDRLDHLI GPTVKIAGAV GGHNAVSLAN SSSQHAHX
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024026698.14e-63trihelix transcription factor ASIL2
RefseqXP_024026700.14e-63trihelix transcription factor ASIL2
SwissprotQ9LJG84e-58ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A2P5B8L04e-68A0A2P5B8L0_PARAD; Trihelix transcription factor
TrEMBLA0A2R6QFA13e-68A0A2R6QFA1_ACTCH; Trihelix transcription factor
STRINGVIT_09s0002g00720.t018e-61(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79193044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.15e-47sequence-specific DNA binding transcription factors