PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK22647.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB
Protein Properties Length: 173aa    MW: 20079 Da    PI: 9.9971
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK22647.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.6e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l ++++ +G g+W+++++  g+ R++k+c++rw +yl
        PK22647.1 14 KGLWSPEEDEKLFNYITHFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding48.12.6e-1567111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg ++++E++l++ +++ lG++ W+ Ia+ ++ gRt++++k++w++ 
        PK22647.1  67 RGMFSQQEEDLIISLHQVLGNR-WAQIAAQLP-GRTDNEIKNFWNSC 111
                      788*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-25664IPR009057Homeodomain-like
PROSITE profilePS5129424.484965IPR017930Myb domain
SuperFamilySSF466891.36E-2912108IPR009057Homeodomain-like
SMARTSM007176.2E-121363IPR001005SANT/Myb domain
PfamPF002491.3E-141461IPR001005SANT/Myb domain
CDDcd001673.05E-101761No hitNo description
Gene3DG3DSA:1.10.10.602.5E-2665117IPR009057Homeodomain-like
SMARTSM007173.7E-1366114IPR001005SANT/Myb domain
PROSITE profilePS5129419.33366116IPR017930Myb domain
PfamPF002492.7E-1467111IPR001005SANT/Myb domain
CDDcd001671.52E-970109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MGRHSCCLKQ KLRKGLWSPE EDEKLFNYIT HFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQQEEDLIIS LHQVLGNRWA QIAAQLPGRT DNEIKNFWNS CLKKKLVKQG  120
IDPTTHKPLS NENNNNNNTM ELAKDKKNGT TTTTRDQKES LMIIPQFHDH HHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024169289.12e-96transcription factor MYB86-like
SwissprotQ8LPH61e-80MYB86_ARATH; Transcription factor MYB86
TrEMBLA0A2P5FFY61e-101A0A2P5FFY6_TREOI; MYB transcription factor
STRINGXP_008239319.14e-92(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58313353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.17e-83myb domain protein 86