PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK22704.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

NAC

Protein Properties

Length: 126aa MW: 15224.5 Da PI: 9.6196

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK22704.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	98.3	1.1e-30	1	114	8	127
NAM 8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkevlskkgelvglkk 104 +Ptd el+ +Lk k++g++ +l++ i+e+d++++ePw+Lp k ++k++ ew+f ++ d ky++ +k+ +r+tk+gyWk tg++++ + +g+k+ PK22704.1 1 NPTDTELI-AHLKLKIDGERSKLDDYIAEIDVCNWEPWELPaKsMLKSDIYEWWFLCRLDYKYSKnSKQVKRSTKTGYWKRTGEERKAKG----CTGMKR 95 6*****.89********999***********5434455555********973667788********999876....79 PP NAM 105 tLvfykgrapkgektdWvmheyr 127 Lvfykgr+ +tdWv+hey PK22704.1 96 NLVFYKGRK----RTDWVIHEYY 114 *7775....78*****6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02365	4.0E-17	1	113	IPR003441	NAC domain
PROSITE profile	PS51005	29.751	1	126	IPR003441	NAC domain
SuperFamily	SSF101941	2.09E-28	2	120	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
NPTDTELIAH LKLKIDGERS KLDDYIAEID VCNWEPWELP AKSMLKSDIY EWWFLCRLDY 60 KYSKNSKQVK RSTKTGYWKR TGEERKAKGC TGMKRNLVFY KGRKRTDWVI HEYYYPQPHI 120 NLKDQV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	8e-18	1	113	22	138	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269\|PubMed:17947243, ECO:0000269\|PubMed:18443413, ECO:0000269\|PubMed:22826500, ECO:0000269\|PubMed:24329768}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015888956.1	7e-39	protein NTM1-like 9 isoform X1
Refseq	XP_015888957.1	5e-39	protein NTM1-like 9 isoform X2
Swissprot	F4JN35	4e-30	NTL9_ARATH; Protein NTM1-like 9
TrEMBL	A0A2P5FH96	1e-45	A0A2P5FH96_TREOI; NAC domain containing protein
STRING	AES84464	8e-34	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF25570	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	2e-32	NAC transcription factor-like 9

Publications ? help Back to Top
Zheng XY, et al. Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73 [PMID:26139525] Guo T, et al. Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana. Mol Plant, 2017. 10(10): p. 1334-1348 [PMID:28943325]