PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK23009.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Dof

Protein Properties

Length: 256aa MW: 28201.3 Da PI: 7.5847

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK23009.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	105.7	2.5e-33	1	48	14	61
zf-Dof 14 tntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ PK23009.1 1 METKFCYFNNYNVNQPRHFCKNCQRYWTAGGSMRNVPIGAGRRKNKHL 48 68********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	24.176	1	47	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-25	1	47	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-21	1	46	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
METKFCYFNN YNVNQPRHFC KNCQRYWTAG GSMRNVPIGA GRRKNKHLAS QFRQIMASGE 60 GARITSSSDE PSNGKVLTFC HNGDDSSLEG NVTEQHAARS HPPQQCYPVV SWDPTQHSHQ 120 QFVVSNPSDS SQVQWLEAPV LSVPTTVPIQ FVQAASYWGC MPIWAAAQAR GNVSVLPALG 180 KHSREESEEG VLASSEASKN QIQGGLGFEF EKENSVYKKL AHSKIEGKDN VLYSSSPVLE 240 ANPAAISRSH SFQEST

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021282282.1	5e-60	cyclic dof factor 3-like
TrEMBL	A0A2P5XL76	3e-55	A0A2P5XL76_GOSBA; Uncharacterized protein
STRING	evm.model.supercontig_161.44	2e-58	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF25573	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69570.1	2e-36	Dof family protein