PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK23050.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NAC
Protein Properties Length: 161aa    MW: 19125.6 Da    PI: 9.9451
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK23050.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM836e-2621244127
        NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                G+ F+Pt++e++ ++L+ k+ g + + +  i e+ d++k+ePw+L +  k+++ +e+ew+f  ++  ++++++ +nr+tk+g+Wk tg+ ke+ +     
  PK23050.1   2 GLTFNPTEQEVI-NHLELKTLGMNSKYDLYIVEIdDMLKFEPWELSAklKLNStKENEWWFLYRSFYRSSSSQCRNRKTKTGFWKVTGRGKEIEN----S 96 
                99**********.99********9999667999989*********852433333677**99999999999999********************88....7 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyr 127
                 g k  L+fykg+++++++t  +m+e+ 
  PK23050.1  97 LGEKSYLTFYKGSSKSSQRTGYTMQEFF 124
                9*************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.9151146IPR003441NAC domain
SuperFamilySSF1019415.1E-252137IPR003441NAC domain
PfamPF023651.1E-112123IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MGLTFNPTEQ EVINHLELKT LGMNSKYDLY IVEIDDMLKF EPWELSAKLK LNSTKENEWW  60
FLYRSFYRSS SSQCRNRKTK TGFWKVTGRG KEIENSLGEK SYLTFYKGSS KSSQRTGYTM  120
QEFFIPPLHH LHQDEFILVI CSLKWDSRKR GRKSDKQKPT X
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1850024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33280.12e-21NAC domain containing protein 15