PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK23183.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GRAS
Protein Properties Length: 106aa    MW: 12072.9 Da    PI: 8.0378
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK23183.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS126.72.7e-391105270374
       GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369
                sl+a++p+es +r+kvE+ ++++ei+n+va eg er+erhe+l kWr+ +e  GFk v+ls +a++q k ll  ++ +gyr+ e++g+l+lgW+drpL++
  PK23183.1   1 SLDATFPAESPQRAKVEQYIFAPEIRNIVAYEGPERIERHERLDKWRKLMEGKGFKGVQLSANAVTQSKILLGLYSCEGYRLTEDNGCLLLGWMDRPLIA 100
                799************************************************************************************************* PP

       GRAS 370 vSaWr 374
                +SaWr
  PK23183.1 101 ASAWR 105
                ****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035149.3E-371105IPR005202Transcription factor GRAS
PROSITE profilePS5098516.408185IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
SLDATFPAES PQRAKVEQYI FAPEIRNIVA YEGPERIERH ERLDKWRKLM EGKGFKGVQL  60
SANAVTQSKI LLGLYSCEGY RLTEDNGCLL LGWMDRPLIA ASAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-251104276378Protein SCARECROW
5b3h_A2e-251104275377Protein SCARECROW
5b3h_D2e-251104275377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003549053.12e-62DELLA protein RGL1
RefseqXP_028206779.12e-62DELLA protein RGL1-like
SwissprotG7L1669e-59RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A2P5CJP52e-64A0A2P5CJP5_PARAD; GRAS transcription factor
STRINGGLYMA16G05751.18e-62(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94703243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.13e-27scarecrow-like 3
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]