PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK23332.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ERF
Protein Properties Length: 228aa    MW: 25401.6 Da    PI: 6.6741
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK23332.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.76.7e-1962112155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                + y+GVr++  +g+Wv+e+r+p   +k++r++lg+f tae+Aa+a++ a+ +l+g
  PK23332.1  62 PVYRGVRRRN-SGKWVCEVREP---NKKTRIWLGTFPTAEMAARAHDVAAIALRG 112
                68*****888.8******9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-1462112IPR001471AP2/ERF domain
PROSITE profilePS5103222.76163120IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2263122IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-3263122IPR001471AP2/ERF domain
SMARTSM003802.5E-3163126IPR001471AP2/ERF domain
CDDcd000182.39E-3264122No hitNo description
PRINTSPR003672.3E-96475IPR001471AP2/ERF domain
PRINTSPR003672.3E-986102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MDHFYSATSD VWSFEGSTET MSPSDSFSSS RPMNFSDEEL LLASSNPKKR AGRKKFKETR  60
HPVYRGVRRR NSGKWVCEVR EPNKKTRIWL GTFPTAEMAA RAHDVAAIAL RGRSACLNFA  120
DSAWKLPSPV SLDPKDIQKA ASEAAEAFRP VGLAEESVKK KRTATTATSE TTPENVFCLD  180
DEVFGMPGLL TNMAEAMLLS PPHYMDQHYY SSDDVDVCAD VSLWSYSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-15611191271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00557DAPTransfer from AT5G51990Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024028683.11e-113LOW QUALITY PROTEIN: dehydration-responsive element-binding protein 1A
SwissprotQ9FJ938e-75DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A2P5C9S51e-125A0A2P5C9S5_TREOI; AP2/ERF domain containing protein
STRINGEMJ195112e-95(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.16e-69C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]