PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK23555.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 219aa    MW: 24470.8 Da    PI: 8.9537
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK23555.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.4e-132880155
               CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
               ++ +hn+ Er RR+++N+ ++ Lr+llP+ +   + kKls  +++ ++ +Y+ +Lq
  PK23555.1 28 KKLNHNASERDRRKKVNHMYSALRSLLPPsD---HTKKLSIPATVSRVLKYVPELQ 80
               6789*************************44...6666**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.15E-122684No hitNo description
SuperFamilySSF474591.83E-1527100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.9162779IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-112880IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-1228100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.6E-113385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
NGSKLIAPLR HPHPRPPPXN SDLTMVEKKL NHNASERDRR KKVNHMYSAL RSLLPPSDHT  60
KKLSIPATVS RVLKYVPELQ EEVESLVLKK EELLSKMNSM QQGKTITATT TANQEIKKVK  120
SIGPNSLSSI SATQLSEKEI AVQILSYKAD NDLLSEMLHN YEIEGLSLLH ASSFESIGGR  180
LFHNLHLQAE VSYCMESGTT IDANLLSLHD NKEKLLVVQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024922954.11e-64transcription factor ORG2-like isoform X1
TrEMBLA0A2P5ETM56e-78A0A2P5ETM5_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_010108530.13e-62(Morus notabilis)
STRINGXP_010108531.14e-62(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24023379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.11e-33bHLH family protein