PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK23608.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

G2-like

Protein Properties

Length: 296aa MW: 32373.8 Da PI: 7.2664

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK23608.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.2	3.8e-33	34	88	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl PK23608.1 34 KPRLRWTADLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 88 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.1E-32	31	90	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-23	34	88	IPR006447	Myb domain, plants
SuperFamily	SSF46689	8.96E-17	34	91	IPR009057	Homeodomain-like
Pfam	PF00249	2.7E-7	36	87	IPR001005	SANT/Myb domain
Pfam	PF14379	6.5E-15	123	168	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MGQDDIQIQG IGSNHGLNQN LRGDPCLVLT SDPKPRLRWT ADLHERFVDA VTQLGGASKA 60 TPKAIMRTMN VKGLTLFHLK SHLQKYRLGI QSGKDMASFL IDSPRTGNSS PNLPTSDMNE 120 GYEVKEALRA QMEVQSKLHL QVEAEKHLQI RQNAERRYMA MLERACKMLA DQFIGGSVID 180 MEHQKYQGLG SKTPMSHTMD PLGFYSSQSA GVAGVQGREE MPNSLCPLRA DCSTESCLTS 240 HESPGGLTLE GSPGGGKKSM LSLDSTASLI WSETKVRTQE VNVTQVDPLG ITNYGI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-19	34	87	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-19	34	87	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-19	34	87	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-19	34	87	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024021467.1	0.0	protein PHR1-LIKE 2 isoform X2
Swissprot	Q94A57	1e-59	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A2P5C9E2	0.0	A0A2P5C9E2_PARAD; Octamer-binding transcription factor
STRING	XP_008224659.1	1e-160	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6618	33	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	4e-62	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]