PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK23609.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C3H
Protein Properties Length: 431aa    MW: 47099.2 Da    PI: 7.5133
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK23609.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.88.9e-09109129526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 C+++ + G C yGd+CkF H+
  PK23609.1 109 VCNYWIQ-GNCTYGDKCKFLHS 129
                6******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.2582248IPR000571Zinc finger, CCCH-type
SMARTSM003560.832347IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.103104131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-7105129IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6106130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-7108127IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-6109129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.103.4E-18128245IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003204.0E-6135174IPR001680WD40 repeat
SuperFamilySSF509784.76E-48136423IPR017986WD40-repeat-containing domain
PfamPF004001.8E-5138174IPR001680WD40 repeat
PROSITE profilePS5029421.885142391IPR017986WD40-repeat-containing domain
PROSITE profilePS5008214.519142183IPR001680WD40 repeat
PROSITE patternPS006780161175IPR019775WD40 repeat, conserved site
PRINTSPR003206.4E-6161175IPR020472G-protein beta WD-40 repeat
SMARTSM003201.5214251IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.104.9E-34246423IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003207.7E-4258295IPR001680WD40 repeat
PfamPF004000.0019260295IPR001680WD40 repeat
PROSITE profilePS5008211.812265304IPR001680WD40 repeat
PRINTSPR003206.4E-6282296IPR020472G-protein beta WD-40 repeat
SMARTSM003200.0017298335IPR001680WD40 repeat
PfamPF004000.0033300334IPR001680WD40 repeat
SMARTSM003201.1339382IPR001680WD40 repeat
PRINTSPR003206.4E-6369383IPR020472G-protein beta WD-40 repeat
SMARTSM003200.49385422IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MDVDGGGNKR VFHRLTGPSS DSKNQKVCYH WRAGKCNRFP CPFLHRELHP PAVHPPNGTA  60
PSSSKRHHAF AASAEDHSGP RRVPHNNTWG RVHGGNAGGN KFVRKTDKVC NYWIQGNCTY  120
GDKCKFLHSW TMGDGFSLLT QLEGHQNVVT GIALPSGSDK LYTGSKDETV RIWDCQSGQC  180
AAVIQLGCEV GCMISEGPWI FVGMLNMVKA WNTQTNTESS LTGPVGQVYS LVVGNELLFA  240
GTQDGSILVW KFNVSTNCFE PLTSLKGHSL PVVSLVVGAN RLYSGSMDHS IKVWSLETLQ  300
CLQTLTDHSA VVMSVLCWDQ FLLSCSLDQT IKVWVSTQNG GLEVTYTHNE EHGVLALCGM  360
HDSEGKPVLL SSCNDNSVRL YDLPSFTERG KFFSKQEVRS IQVGPGGLFF TGDGTGQVRV  420
WNMVAETAST A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-221304235323Tako8
6g6n_A2e-221304235323Tako8
6g6n_B2e-221304235323Tako8
6g6n_C2e-221304235323Tako8
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024028274.10.0zinc finger CCCH domain-containing protein 63
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A2P5D9H10.0A0A2P5D9H1_PARAD; Guanine nucleotide-binding protein, beta subunit
STRINGXP_008234304.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74463343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1