PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK23777.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

LBD

Protein Properties

Length: 220aa MW: 23829.7 Da PI: 6.2245

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK23777.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.3	4.6e-42	66	165	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l+++pe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+ +la++++e PK23777.1 66 PCAACKILRRRCVDKCVLAPYFPPTEPIKFTIAHRVFGASNIIKFLQEIPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQGQLAKAQAE 165 7***********************************************************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.813	65	166	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-42	66	163	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005739	Cellular Component	mitochondrion

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
XFSSSLPLQQ YSPNNSSSSS PTLNNSSSQL SSPPSSQSSP TSTSNNNVSP TPPPPPPPPP 60 AIVMSPCAAC KILRRRCVDK CVLAPYFPPT EPIKFTIAHR VFGASNIIKF LQEIPESQRA 120 DAVSSMVYEA NARIRDPVYG CAGAICQLQK QVSELQGQLA KAQAELVNMQ CQQANLIALI 180 CMDVTHLQDP PNSHQQPPYV DTACFLDDTT LGTTWEPLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-43	65	177	10	122	LOB family transfactor Ramosa2.1
5ly0_B	3e-43	65	177	10	122	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010108453.1	1e-103	LOB domain-containing protein 1
Swissprot	Q9LQR0	1e-72	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A2P5CBX1	1e-102	A0A2P5CBX1_PARAD; Lateral organ boundaries domain containing protein
STRING	XP_010108453.1	1e-102	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1303	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	8e-74	LOB domain-containing protein 1