PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK23977.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family G2-like
Protein Properties Length: 236aa    MW: 25129.9 Da    PI: 7.1915
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK23977.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.31.1e-30112165155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  PK23977.1 112 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 165
                59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.88E-20109169IPR009057Homeodomain-like
PROSITE profilePS5129411.059109168IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.5E-31111170IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-24113165IPR006447Myb domain, plants
PfamPF002497.7E-8115164IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MREDDSNWFN RWAEELPSPE ELMPLSQTLI TPDLALAFDI RNSNTAAAVV AAANNGGSPP  60
RAHTHQGPPP PPLSSSQLQP PSSTQPNSSE FGDSADLGSG AAGEEPARTL KRPRLVWTPQ  120
LHKRFVDAVA HLGIKNAVPK TIMQLMSVDG LTRENVASHL QKYRLYLKRM QGLSGSGGGG  180
GAGGGGLAAS PDPATDHLFA SSPVPAHFLH PSRSNSDHFL PFVPVLHHQQ HMAVAX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-33112168157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003521111.12e-98transcription factor MYBC1
RefseqXP_028225157.12e-98transcription factor MYBC1-like
SwissprotO222101e-66MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A2P5D2N81e-97A0A2P5D2N8_PARAD; Octamer-binding transcription factor
STRINGGLYMA03G27890.22e-97(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85423045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.17e-66G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]