PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK24360.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Dof

Protein Properties

Length: 129aa MW: 14405.8 Da PI: 10.8783

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK24360.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	90.3	1.6e-28	2	47	17	62
zf-Dof 17 kfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 kfCy+nny+++qPr+fCk+CrryWt GG++rnv v +grrknk++s PK24360.1 2 KFCYFNNYNVNQPRHFCKNCRRYWTIGGTMRNVHVEAGRRKNKNTS 47 9******************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	21.968	1	45	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.4E-21	2	45	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	6.0E-17	2	44	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
XKFCYFNNYN VNQPRHFCKN CRRYWTIGGT MRNVHVEAGR RKNKNTSASH YRHIITPDVL 60 QKAQVFATNG VHNTTLGSNG TVLSFGSNSP LCESMASALS LADRRKNSVS TKGFHGPEKR 120 MFVSSGVAX

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269\|PubMed:19619493}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010108679.1	4e-63	cyclic dof factor 2
Swissprot	Q93ZL5	1e-31	CDF2_ARATH; Cyclic dof factor 2
TrEMBL	A0A2P5G0I1	6e-62	A0A2P5G0I1_TREOI; Zinc finger, Dof-type
STRING	XP_010108679.1	1e-62	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4145	32	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	6e-34	cycling DOF factor 2

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]