PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK24436.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

WRKY

Protein Properties

Length: 642aa MW: 69866.8 Da PI: 6.3423

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK24436.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.5	1.8e-30	368	426	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ PK24436.1 368 ADGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTILVTTYEGNHNHP 426 7*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.9E-33	352	428	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-27	360	428	IPR003657	WRKY domain
PROSITE profile	PS50811	29.585	362	428	IPR003657	WRKY domain
SMART	SM00774	1.5E-36	367	427	IPR003657	WRKY domain
Pfam	PF03106	2.0E-26	369	426	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 642 aa Download sequence Send to blast
MAKGSGLPID SDPIGFFIHK PTVLNSFEED FNNNKKISNN SINSMDASST IHHHERSPPH 60 HHHHHQTLQF PVNLNYTHHK DNNSPEPSDE NNNNNNRTVI INEMDFFAEN RNRDIKPSPS 120 SYHDMIDHHK SFNEQIDIDM NVNTGLNLLT TNTSSEQSMV DDGVSNDAAA EDKKPTTELV 180 VLHTEFQRVK SENQRLKIAL DQVTNSYNAL QMQLYITQTG NKSDEKVLED GNNNNNDHDD 240 DQNINLTNGT NINEGKVQPV LPRRFMDLGL ANNGEADETS LSSSEERRSE LVKNGHGGDD 300 QMEKKEVNRA LIGREDSDPD QSSQAGWVPN KLPRTTSSGS VKDSDQTEAT MRKARVSVRA 360 RSEAPMIADG CQWRKYGQKM AKGNPCPRAY YRCTMAAGCP VRKQVQRCAE DRTILVTTYE 420 GNHNHPLPPP AMAMASTTSS AARMLLSGSM SSSDGIMNSN FLARAMLPCS SSMATISASA 480 PFPTVTLDLT QSPNPLHLQK PPQPPQFHLA LQQNASSATT AAAAALLPQI LGGQAIYNNQ 540 SKFSGLQMSS LGQENSLAPT TVAARLLGHH SFSSSSPPQN SLSESVNAAT AAIAADPNFT 600 AALAAAITSI ISGTHSNNVS NNNNNNTNNN GNNVNVTNSN SS

Sequence ? help Back to Top

Protein Sequence Length: 642 aa Download sequence Send to blast

MAKGSGLPID SDPIGFFIHK PTVLNSFEED FNNNKKISNN SINSMDASST IHHHERSPPH  60
HHHHHQTLQF PVNLNYTHHK DNNSPEPSDE NNNNNNRTVI INEMDFFAEN RNRDIKPSPS  120
SYHDMIDHHK SFNEQIDIDM NVNTGLNLLT TNTSSEQSMV DDGVSNDAAA EDKKPTTELV  180
VLHTEFQRVK SENQRLKIAL DQVTNSYNAL QMQLYITQTG NKSDEKVLED GNNNNNDHDD  240
DQNINLTNGT NINEGKVQPV LPRRFMDLGL ANNGEADETS LSSSEERRSE LVKNGHGGDD  300
QMEKKEVNRA LIGREDSDPD QSSQAGWVPN KLPRTTSSGS VKDSDQTEAT MRKARVSVRA  360
RSEAPMIADG CQWRKYGQKM AKGNPCPRAY YRCTMAAGCP VRKQVQRCAE DRTILVTTYE  420
GNHNHPLPPP AMAMASTTSS AARMLLSGSM SSSDGIMNSN FLARAMLPCS SSMATISASA  480
PFPTVTLDLT QSPNPLHLQK PPQPPQFHLA LQQNASSATT AAAAALLPQI LGGQAIYNNQ  540
SKFSGLQMSS LGQENSLAPT TVAARLLGHH SFSSSSPPQN SLSESVNAAT AAIAADPNFT  600
AALAAAITSI ISGTHSNNVS NNNNNNTNNN GNNVNVTNSN SS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-21	354	429	1	75	WRKY transcription factor 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023921697.1	0.0	probable WRKY transcription factor 31
TrEMBL	A0A2P5CMD1	0.0	A0A2P5CMD1_TREOI; WRKY domain containing protein
STRING	XP_010089474.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF866	34	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G22070.1	5e-89	WRKY DNA-binding protein 31