PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK24580.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ERF
Protein Properties Length: 316aa    MW: 34700.4 Da    PI: 4.4644
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK24580.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.8e-19105154154
        AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                s y+GVr++k +g+W+AeIrd +     +  r +lg++ t+eeA ka++a r+++e
  PK24580.1 105 SPYRGVRQRK-WGKWAAEIRDpF-----KgSRLWLGTYTTPEEASKAYEAKRLEFE 154
                68*******9.**********55.....45***********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.83E-16105153IPR016177DNA-binding domain
PROSITE profilePS5103219.954106163IPR001471AP2/ERF domain
SMARTSM003809.5E-19106168IPR001471AP2/ERF domain
CDDcd000183.27E-22107153No hitNo description
PRINTSPR003671.3E-9107118IPR001471AP2/ERF domain
PfamPF008475.9E-12107155IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-22107154IPR001471AP2/ERF domain
PRINTSPR003671.3E-9129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MPEPRNQSSK SMRKIRVICS DPYATDSSSS EDEGFGRKIS KKCKRIVKEI HVPLFPTKPT  60
KTLESESSVQ DSNYGGCVVV SQTLSNPKRR VFAKTSNGSR KPSSSPYRGV RQRKWGKWAA  120
EIRDPFKGSR LWLGTYTTPE EASKAYEAKR LEFEAMANAN STPKFNSSSS SASASVSASV  180
SVSVSVSASA EDSESVLSHN SPASVLELET SASDSKLDET INANVTEEET PDLGFMDEVL  240
ASFPPLEQDI NFGPELDTLF LDDIDDLLNG FNNIDDIQLF GVEDKDSSNL PNYDFDDLGK  300
DDISFWMEGA LNIPCL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023885153.12e-98ethylene-responsive transcription factor ERF119-like
TrEMBLA0A2P5DZ651e-136A0A2P5DZ65_PARAD; AP2/ERF transcription factor
STRINGXP_010103775.12e-93(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.27e-34ERF family protein