PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK24620.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NAC
Protein Properties Length: 161aa    MW: 18915.7 Da    PI: 9.9632
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK24620.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM85.41.1e-2661292127
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                 +Gf F+Pt+++++ ++L+ k  g + el+  i+ev di++++P +L +  k++++++ew+f  +   ++++++ knr+tk+g+Wk tg+ k++      
  PK24620.1   6 LVGFTFSPTEQQVI-NHLRLKNLGMDSELDPYIAEVdDILEFDPCELAAksKLRSNKDEWWFLYRLFYRSSRSQSKNRKTKTGFWKVTGRGKKIEG---- 100
                58************.99*********999777****99*********84246777778**999999999999**********************87.... PP

        NAM  99 lvglkktLvfykgrapkgektdWvmheyr 127
                 vg k  L+fykg+ ++++ktd +m+e+ 
  PK24620.1 101 SVGEKSYLTFYKGSCNSSQKTDYTMQEFY 129
                89*************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-265143IPR003441NAC domain
PROSITE profilePS5100527.6995151IPR003441NAC domain
PfamPF023653.0E-137129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
NPPMVLVGFT FSPTEQQVIN HLRLKNLGMD SELDPYIAEV DDILEFDPCE LAAKSKLRSN  60
KDEWWFLYRL FYRSSRSQSK NRKTKTGFWK VTGRGKKIEG SVGEKSYLTF YKGSCNSSQK  120
TDYTMQEFYI PPHHHLHQDE FILVICSLKW KLVSRKRGRK S
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1850024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.13e-20NAC domain containing protein 69