PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK24648.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

NF-YB

Protein Properties

Length: 159aa MW: 16888.6 Da PI: 4.8217

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK24648.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	186.9	1.4e-58	17	112	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfedyv+plk+yl+k+re+egek PK24648.1 17 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKIYLQKFREMEGEK 112 89********************************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.0E-54	14	121	IPR009072	Histone-fold
SuperFamily	SSF47113	4.35E-41	19	116	IPR009072	Histone-fold
Pfam	PF00808	3.5E-28	22	86	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	7.9E-21	50	68	No hit	No description
PROSITE pattern	PS00685	0	53	69	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	7.9E-21	69	87	No hit	No description
PRINTS	PR00615	7.9E-21	88	106	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MADSDNDSGG PNSASPREQD RFLPIANVSR IMKKALPANA KISKDAKETV QECVSEFISF 60 ITGEASDKCQ REKRKTINGD DLLWAMTTLG FEDYVDPLKI YLQKFREMEG EKTAGATLGR 120 GQGGDSGGSD DHGSFAANSG GGGMYGHSSN INSGVQSTG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	2e-48	17	107	7	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022855621.1	4e-77	nuclear transcription factor Y subunit B-3-like
Swissprot	Q75IZ7	2e-74	NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A2P5C9A9	4e-80	A0A2P5C9A9_PARAD; Nuclear transcription factor Y subunit B
STRING	Lus10022514	7e-76	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF591	34	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	3e-75	nuclear factor Y, subunit B3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]