PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK24670.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

LBD

Protein Properties

Length: 83aa MW: 9370.74 Da PI: 9.4689

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK24670.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	89.4	4.6e-28	12	82	1	71
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearard 71 +CaaCk+lr++C++dC+++pyfp+++p++f +vhk+FGasnv k+lk+lp e r +a++++ +eA +r+++ PK24670.1 12 RCAACKYLRKSCPSDCIFSPYFPSNNPQRFSFVHKVFGASNVGKMLKRLPVELRGEAADTMHFEATCRIEN 82 6*******************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.571	11	83	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.1E-28	12	82	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 83 aa Download sequence Send to blast
MSSLSSSSHH TRCAACKYLR KSCPSDCIFS PYFPSNNPQR FSFVHKVFGA SNVGKMLKRL 60 PVELRGEAAD TMHFEATCRI ENR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-22	13	82	12	81	LOB family transfactor Ramosa2.1
5ly0_B	5e-22	13	82	12	81	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021910100.1	3e-37	LOB domain-containing protein 24-like
Swissprot	P59467	1e-30	LBD23_ARATH; LOB domain-containing protein 23
Swissprot	P59468	1e-30	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A2P5DKN3	4e-38	A0A2P5DKN3_TREOI; Lateral organ boundaries domain containing protein
STRING	evm.model.supercontig_1.339	3e-37	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3697	30	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	2e-32	LOB domain-containing protein 24