PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK24688.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

LBD

Protein Properties

Length: 190aa MW: 20456.9 Da PI: 8.3759

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK24688.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	145.2	1.9e-45	32	131	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l++lp ++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+a+lal+++e PK24688.1 32 PCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVQHRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAE 131 7**********************************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.19	31	132	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.2E-45	32	129	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
XSRVEWSSYI DRMKDISGSG GGGGRKQGAP SPCAACKLLR RRCAQDCVFA PYFPADEPQK 60 FANVHKVFGA SNVNKMLQEL PVQHRGDAVS SMVYEANARV RDPVYGCVGA ISSLQQQIDV 120 LQAQLALAQA EVVHLRVRQN ASLSSHGLSP ASPSNSGSPS PKLMGSQPNK PIFEMDMSVD 180 QGSFGETIWC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-48	28	133	7	112	LOB family transfactor Ramosa2.1
5ly0_B	4e-48	28	133	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022777251.1	1e-102	LOB domain-containing protein 4 isoform X1
Swissprot	Q9SHE9	5e-77	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A314YWZ3	1e-100	A0A314YWZ3_PRUYE; LOB domain-containing protein 4
STRING	XP_009353911.1	1e-100	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1334	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	6e-72	LOB domain-containing protein 4