PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK24695.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

SRS

Protein Properties

Length: 250aa MW: 28450.5 Da PI: 8.6026

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK24695.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	174.3	5.8e-54	85	229	7	154
DUF702 7 sCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkeletsslP 106 +C dCGn+akk+C ++RCRtCC++r+f C+thv+stWvp+a rr+r+++ ++ss++ + + ++skr+ +++++++s+t ++ +++ + ++slP PK24695.1 85 ACSDCGNRAKKECRFKRCRTCCRARAFPCSTHVRSTWVPVACRRKRRRHDPSSSSSSIS--SFSHSKRPTLYDCHTTTSISNTLTTFTNQD-ATLKQSLP 181 7*******************************************9999888776665..667778888877888888888877777666.555667 PP DUF702 107 eevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++v+++a+frc rv++++dge e+aYq av i GhvfkG+LydqG++e PK24695.1 182 SKVHAPAIFRCHRVTAISDGEVEVAYQVAVRICGHVFKGFLYDQGVDE 229 **********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.3E-48	85	228	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.3E-21	86	126	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.1E-23	180	227	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
XLLHLLLEFS FFRFKFGKNK EKEKEEHMNQ QQQPIYYSSS NHLLEPCSSN DAVFTYWKWR 60 DQTEAEAEAE AEEGVTPPIL NCWRACSDCG NRAKKECRFK RCRTCCRARA FPCSTHVRST 120 WVPVACRRKR RRHDPSSSSS SISSFSHSKR PTLYDCHTTT SISNTLTTFT NQDATLKQSL 180 PSKVHAPAIF RCHRVTAISD GEVEVAYQVA VRICGHVFKG FLYDQGVDEK NGDYSTSSSP 240 IVALSTPNPX

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	131	RKRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015876225.1	1e-51	protein LATERAL ROOT PRIMORDIUM 1-like isoform X1
Swissprot	Q94CK9	3e-37	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A2P5BWY9	3e-67	A0A2P5BWY9_PARAD; Uncharacterized protein
STRING	MLOC_14639.1	1e-47	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5704	31	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	1e-32	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]